Create a Deposit: click the +New icon in the upper left corner in QuickBooks Online, select Bank Deposit.

Select the Checking account in the drop down that you want to move these payments to.

Select the invoices that you need to add to the deposit by checking the box next to the customer name 

Add the CC fees on the bottom of the deposit, in the 'Add funds to this deposit' section.

Select the 'HouseCall Pro' for the vendor under the 'Received From' column

Select the 'HouseCall Pro Credit Card Processing Fee' expense account from the Account drop down

Add the invoice numbers for Ref. No

Insert the CC fee as a negative dollar Amount. (You can find these fees broken down on the Payouts screen in HCP, under Settings.)

Confirm the 'Other Funds Total' matches the total of the CC fees, and the Deposit total now matches the amount that was deposited into your bank.

Click Save.